Chinese Chemical Letters  2026, Vol. 37 Issue (3): 111554   PDF    
Self-assembled chiral cages for anion recognition
Ze Caoa,1, Chenqi Gea,1, Yating Wua, Hua Tanga, Yueyan Kuanga, Yuyang Wua, Hao Lia,b,*     
a Department of Chemistry, Zhejiang University, Hangzhou 310058, China;
b ZJU-Hangzhou Global Scientific and Technological Innovation Center, Zhejiang University, Hangzhou 311200, China
Abstract: In this study, two chiral cationic cage-shaped hosts were successfully self-assembled via imine condensation, achieving near-quantitative yields. Compared with the counterparts bearing a single imine bond, the intrinsic multivalency of the cage frameworks confers significant robustness to the cages, even when exposed to aqueous environments. Each cage features three relatively acidic CH protons oriented towards the interior cavity or clefts, enabling the efficient recognition of anionic guests through cooperative hydrogen bonding. The cage containing pyridinium functions adopts a pseudo face-in conformation, thus it accommodates anionic guests in its peripheral windows in a 1:2 stoichiometry. As a comparison, the cage containing imidazolium functions adopts an edge-in conformation, and thus recognizes the anions within the cavity in a 1:1 binding stoichiometry.
Keywords: Self-assembly    Chiral cage    Dynamic covalent bond    Anion recognition    

Anion detection has proven to be of significant importance due to the critical roles these negatively charged species play in nature. Anions are involved in mediating essential processes such as metabolic regulation [13], aquatic eutrophication [46], and the maintenance of physiological homeostasis [710]. A widely adopted strategy for anion recognition involves designing macrocyclic hosts with intrinsic cavities that can accommodate anionic guests through noncovalent interactions, particularly hydrogen bonding, in a synergistic manner [1115]. Recently, inspired by the enhanced binding affinities of cryptands toward cationic guests compared to their two-dimensional counterparts (e.g., crown ethers) [16,17], chemists have discovered that cage-shaped molecules often exhibit stronger anion-binding capabilities than macrocyclic analogues [1824]. A notable example of this was reported by Flood and co-workers, who synthesized a cage, via a click reaction, that was capable of extracting chloride anions from aqueous solution [25]. However, a frequent drawback of these irreversible synthetic approaches is the generation of oligomeric or polymeric byproducts during the formation of the target cage molecules.

Reversible covalent reactions provide a promising alternative by enabling error correction during self-assembly [2630]. Nevertheless, this dynamic nature can compromise the robustness of the self-assembled molecules. For instance, acceptors containing imine bonds, a commonly used dynamic covalent bond, are prone to hydrolysis in aqueous media [3133]. Therefore, the development of synthetic strategies that balance the error-correcting benefits of reversible reactions with high product stability remains a key challenge. As demonstrated in prior research [34], a cage-shaped molecule was synthesized in near-quantitative yield by condensing a triscationic hexaformyl precursor with three equivalents of bisamine linker. Despite the presence of six imine bonds in its framework, the cage exhibits remarkable kinetic stability against hydrolysis in aqueous media, compared with those compounds each contains only one single imine bond. This stability arises from the fact that disrupting one of the three bisamino building blocks requires breaking two imine bonds simultaneously, a process that is significantly more energy-demanding than cleaving a single bond. Leveraging the hydrophobic effect, the cage can encapsulate alkane derivatives within its intrinsic cavity, where all the aromatic building blocks in the cage framework are oriented in a face-in configuration. Building on this, we hypothesize that by reorienting the cationic pyridinium units into an edge-in arrangement, the cage could potentially recognize anionic guests through hydrogen bonding interactions.

Herein, we report the self-assembly of two structurally analogous chiral cationic cages via the condensation of 3 equiv. of a bisamine linker with 1 equiv. of a hexaformyl compound, affording the desired products in near-quantitative yields. Within the framework of each cage, three acidic CH protons are oriented toward the interior cavity or the clefts, facilitating the accommodation of anionic guests through the formation of synergistic hydrogen bonds exhibiting modest binding affinities in both organic and aqueous media.

Two triscationic hexaaldehydes, 2a3+·3PF6 and 2b3+·3PF6, were synthesized via SN2 reactions between tris(bromomethyl)benzene and the corresponding pyridine or imidazole precursors, followed by counterion exchange from bromide (Br) to hexafluorophosphate (PF6). To construct the cage R-3a3+, 2a3+·3PF6 and (1R,2R)-(-)-1,2-diaminocyclohexane ((R,R)-CHDA) were combined in a 1:3 molar ratio in CD3CN (Fig. 1).

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Fig. 1. Self-assembly of the cages R-3a3+·3PF6 and R-3b3+·3PF6 by condensing the hexaaldehyde precursor 2a3+·3PF6 and 2b3+·3PF6 and (1R,2R)-(-)-1,2-diaminocyclohexane ((R,R)-CHDA) in CD3CN.

The mixture was heated at 40 ℃ for at least 12 h, after which the 1H NMR spectrum revealed a set of well-defined resonances corresponding to the formation of the cage molecule R-3a3+. No significant byproducts were observed in the spectrum. Upon addition of tetrabutylammonium chloride (TBA+·Cl) to the solution, R-3a3+·3Cl precipitated and was collected by filtration in 90% yield relative to the aldehyde precursor 2a3+·3PF6. The isolated 3a3+·3Cl was soluble in D2O, and its ¹H NMR spectrum confirmed its stability in aqueous media, with no observable degradation during either counterion exchange or dissolution (Fig. S22 in Supporting information). Addition of ammonium hexafluorophosphate (NH4+·PF6) to the aqueous solution resulted in the precipitation of R-3a3+·3PF6 in 95% yield relative to R-3a3+·3Cl. Dissolving R-3a3+·3PF6 in CD3CN yielded a ¹H NMR spectrum identical to that of the initial self-assembly solution, confirming the integrity of the cage structure (Fig. S17 in Supporting information). The enantiomer S-3a3+·3Cl and S-3a3+·3PF6 were synthesized following a similar procedure, using (S,S)-CHDA as the amino precursor. Similarly, analogous reactions using imidazolium-based precursor 2b3+ afforded R-3b3+·3PF6 and R-3b3+·3Cl, as well as their enantiomers S-3b3+·3PF6 and S-3b3+·3Cl. All cages were obtained in high yields, a result attributed to the dynamic nature of the imine bonds, which facilitates error correction during the self-assembly process.

The planar chirality of the cages is induced by the point chirality of the bisamino building blocks, specifically (R,R)-CHDA or (S,S)-CHDA. This chirality was confirmed through circular dichroism (CD) spectroscopy. In the CD spectra recorded in water, the cages S-3a3+·3Cl and S-3b3+·3Cl displayed (Fig. 2) mirror-image signals compared to their enantiomers, R-3a3+·3Cl and R-3b3+·3Cl, respectively.

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Fig. 2. CD spectra of R-3a3+·3Cl (red trace in (a)), S-3a3+·3Cl (blue trace in (a)), R-3b3+·3Cl (red trace in (b)) and S-3b3+·3Cl (blue trace in (b)). All spectra were recorded in water.

Diffraction-quality single crystals of R-3a3+·3PF6, S-3a3+·3PF6 and R-3b3+·3PF6 were successfully obtained by vapor diffusion of isopropyl ether into their respective acetonitrile solutions (CCDC 2363838, 2363601 and 2308786, respectively). The resulting solid-state structures unequivocally confirmed the formation of the cages (Fig. 3 and Fig. S118 in Supporting information). As anticipated, the frameworks of R-3a3+ and S-3a3+ are mirror images of each other, reflecting their enantiomeric relationship. In both the R/S-3a3+ and R-3b3+ frameworks, each pyridinium or imidazolium unit adopts an edge-in orientation. In the case of R-3b3+, two of the three imidazolium units are oriented in a near perpendicular manner relative to the corresponding phenyl unit. As a consequence, the acidic imidazolium protons are directed toward the interior cavity. This conformation favors the formation of inclusion complexes, in which the anionic guest is located within the cage cavity. In the case of R-3a3+, as a comparison, dihedral angle between each of the pyridinium unit and the corresponding phenyl unit is around 40°, indicating a pseudo face-in orientation. This conformation allows R-3a3+ to accommodate guests in each of the three windows. This hypothesis is supported by the solid-state structure of R/S-3a3+·3PF6, in which the PF6 counterions are located in the windows between the two pyridinium units. The cavity sizes of 3a3+·3PF6 and 3b3+·3PF6 were 135 Å3 and 112 Å3, respectively, calculated via GHECOM [35]. In the solid state, the cavities of both cages are devoid of any solvent molecules or PF6 counterions.

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Fig. 3. Single-crystal X-ray diffraction structures of (a) R-3a3+·3PF6, (b) R-3b3+·3PF6. Carbon, grey; Nitrogen, blue. Disordered solvent molecules, hydrogen atoms and counterions are omitted for the sake of clarity.

We then investigated the possibility of using the cages as acceptors to accommodate anions. First, based on the chiral nature of the cages, we investigated the recognition capabilities for chiral anions (e.g., alanine or lactate). Unfortunately, no recognition was observed toward chiral anions, probably because none the chiral anionic guests had complementary size relative to the cage cavity. Therefore, we turned our attention to the achiral anions with smaller sizes such as halides. We evaluated the anion-binding capabilities of 3a3+ and 3b3+ in organic solvent, namely CD3CN or CD3SOCD3. The 1H NMR spectra of the cages before and after the addition of tetrabutylammonium salts (TBA+·X, X = Cl, Br, I and NO3) were recorded and compared, indicating these anions were encapsulated within the cage cavities. For example, upon addition of TBA+·Cl into a solution of 3a3+·3PF6 and 3b3+·3PF6 in CD3CN, a number of resonances of the cage undergo shifts (Fig. 4). At the early stage of titration when Cl added was <3 equiv. relative to the hosts, the resonance corresponding to protons Hc and Hh of 3a3+ and protons Hc and Hg of 3b3+, which are directed toward the interior cavity, confirm that the anionic guests are recognized. The resonances corresponding to other protons that are located in relatively external positions in the cage framework underwent less remarkable shifts. These observations confirm that the anionic guests are recognized within the cage cavity, driven by hydrogen bonding interactions and electrostatic forces. In the case of 3b3+, the shifts of resonances became less remarkable when the amount of Cl added is in excess. For example, the 1H NMR spectra of 3b3+·3PF6 in the presence of 13.8 and 18.8 equiv. of TBA+·Cl were similar (Fig. 4c), indicating that most of the host cavities are occupied by the anionic guest. As a comparison, in the case of 3a3+, the saturation behavior did not occur even after adding 27.5 equiv. of Cl (Fig. 4b, top). It is noteworthy that the resonances corresponding to Hg and Hj, which barely shift in the early stage of anion titration, underwent downfield shift in the presence of excess Cl. This observation indicated that 3a3+ might have multiple binding modes towards Cl during titration. That is, in the early stage of anion titration, the cage employed its cavity to recognize anionic guest, while in the late stage, the anions were recognized in a peripheral manner, leading to the shifts of the resonances corresponding to the external protons.

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Fig. 4. (a) Schematic diagram of the different binding stoichiometries of 3a3+·3PF6 and 3b3+·3PF6 with Cl. Partial 1H NMR spectra (600 MHz, CD3CN, 298 K) of the cage (b) 3a3+·3PF6 and (c) 3b3+·3PF6 upon titration with different amounts of TBA+·Cl, till complete precipitation.

Job plot analyses were conducted to determine the binding stoichiometry between the cages and anionic guests. The Job plot of 3a3+ and 3b3+ in CD3CN revealed markedly distinct binding modes: 3a3+ exhibited a 1:2 stoichiometry with all investigated anions, whereas 3b3+ adopted a 1:1 binding ratio (Fig. 5). This difference is consistent with the NMR titration experiments, namely that 3b3+ can only form the 1:1 inclusion complexes by using the cavity to encapsulate the anions, while 3a3+ can form both inclusion and peripheral complexes by utilizing the windows as secondary binding sites.

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Fig. 5. Job plot of (a) 3a3+·3PF6and (b) 3b3+·3PF6 to I made based on the corresponding 1H NMR spectroscopic results in Supporting information.

The corresponding binding constants (Ka) were calculated via Bindfit. Using a 1:2 binding model might be more reasonable for 3a3+. However, the attempt to do so only provided some unreliable secondary binding constants (Ka2), probably because the Ka2 values are too small to be determined. We thus used the 1:1 binding model to calculate the Ka for both 3a3+·3PF6 and 3b3+·3PF6 in both CD3CN and CD3SOCD3, which are summarized in Table 1. In the case of both cages, Ka values are significantly larger in CD3CN compared to those in CD3SOCD3. For example, Ka was measured to be 1.5 (±0.1) × 103 L/mol for the cage 3a3+ to recognize Br in CD3CN, while Ka was measured to be 1.0 (±0.1) × 102 L/mol in CD3SOCD3, representing a decrease of more than one order of magnitude. This is predictable, given that more polar solvent, CD3SOCD3, helps to suppress both hydrogen bonding and electrostatic interactions. The apparent binding constants Ka of cage 3a3+ for Br and I are significantly higher than those for Cl, while cage 3b3+ shows slightly lower Ka values for Br and I compared to Cl. This is probably because cage 3b3+ possesses a smaller cavity size compared to 3a3+, while Br and I exhibit significantly larger ionic radii than Cl [36,37].

Table 1
Binding constants between two cages and anion guests in CD3CN, CD3SOCD3 and D2O.a

We also investigated the possibility of using 3a3+·3Cl and 3b3+·3Cl to recognize highly hydrated anions such as Cl, Br and NO3 in aqueous media. We attempted to obtain the Job plot in D₂O, but this approach failed due to the weak binding constant between the cage and anionic guest in D₂O [38]. However, the corresponding binding constants measured in water proved to be much weaker compared to those in organic media. For example, addition of NaCl into a solution of 3a3+·3Cl led to little or no shifts in the resonances of the cage, indicating the apparent binding constant Ka is too low to be determined (Fig. S104 in Supporting information). An alternative explanation, that the cavity of 3a3+ is already occupied by a Cl ion due to an extraordinarily high Ka, is considered unlikely, as the Ka in CD3CN is only 8.7 (±0.1) × 102 L/mol. Both cages exhibit modest Ka values for Br and NO3. Attempts to determine the Ka value for I were unsuccessful, given that addition of I into the D₂O solutions of these two cages led to precipitation.

In summary, two sets of enantiomerically pure, cage-shaped molecules were successfully self-assembled in near-quantitative yields via dynamic imine condensation, bypassing the need for stepwise synthesis. Both cages demonstrate exceptional robustness, enabling their isolation as pure solid-state materials via counterion exchange without detectable degradation. The cationic building blocks, either pyridinium or imidazolium, adopt different conformations within the cage frameworks, namely that the imidazolium units are oriented in an edge-in manner, favoring the formation of an inclusion complex, while the pyridinium units are oriented in a pseudo face-in manner, allowing the cage to utilize both the cavity and the windows to accommodate anionic guests. As a consequence, the two cages respectively adopt distinct 1:1 and 1:2 binding stoichiometries. While binding affinities for highly hydrated anions remain modest in aqueous media, future efforts will focus on structural modifications, such as incorporating additional hydrogen bond donors or expanding cavity dimensions to accommodate larger guests. These investigations are currently underway in our laboratory.

Declaration of competing interest

The authors declare that they have no known competing financial interests or personal relationships that could have appeared to influence the work reported in this paper.

CRediT authorship contribution statement

Ze Cao: Writing – original draft, Validation, Methodology, Investigation, Formal analysis. Chenqi Ge: Supervision, Methodology, Investigation, Formal analysis. Yating Wu: Supervision. Hua Tang: Supervision. Yueyan Kuang: Supervision. Yuyang Wu: Supervision. Hao Li: Writing – review & editing, Supervision, Conceptualization.

Acknowledgments

The research at Zhejiang University was supported by the Starry Night Science Fund of Zhejiang University Shanghai Institute for Advanced Study (No. SN-ZJU-SIAS-006). H. L. Also want to thank the support from the Leading Innovation Team Grant from Department of Science and Technology of Zhejiang Province (No. 2022R01005), the Natural Science Foundation of Zhejiang Province (No. LZ24B020002) and the National Natural Science Foundation of China (No. 22471240). We thank Prof. Qiaohong He, Dr. Jiyong Liu, Dr. Yaqin Liu, Dr. Lina Gao and Dr. Yifan Zhao from the Chemistry Instrumentation Center Zhejiang University for the technical support.

Supplementary materials

Supplementary material associated with this article can be found, in the online version, at doi:10.1016/j.cclet.2025.111554.

References
[1]
J. Zhu, Cell 167 (2016) 313-324. DOI:10.1016/j.cell.2016.08.029
[2]
J.W.J.P. Ascher, Nature (1987) 529-531.
[3]
H. Sies, D.P. Jones, Nat. Rev. Mol. Cell Biol. 21 (2020) 363-383. DOI:10.1038/s41580-020-0230-3
[4]
M.R. Awual, J. Clean. Prod. 228 (2019) 1311-1319. DOI:10.1016/j.jclepro.2019.04.325
[5]
P. Loganathan, S. Vigneswaran, J. Kandasamy, J. Environ. Manage. 131 (2013) 363-374. DOI:10.1016/j.jenvman.2013.09.034
[6]
B. Wu, J. Wan, Y. Zhang, et al., Environ. Sci. Technol. 54 (2020) 50-66. DOI:10.1021/acs.est.9b05569
[7]
C.A. Cooper, J.M. Whittamore, R.W. Wilson, Am. J. Physiol. Regul. Integr. Comp. Physiol. 298 (2010) R870-R876. DOI:10.1152/ajpregu.00513.2009
[8]
A.R.W.F. Boron, Physiol. Rev. 61 (1981) 296-434. DOI:10.1152/physrev.1981.61.2.296
[9]
D. Brown, C.A. Wagner, J. Am. Soc. Nephrol. 23 (2012) 774-780. DOI:10.1681/ASN.2012010029
[10]
L.R. Levin, J. Buck, Annu. Rev. Physiol. 77 (2015) 347-362. DOI:10.1146/annurev-physiol-021014-071821
[11]
Y. Lei, L. Shen, J. Liu, et al., Chem. Commun. 55 (2019) 8297-8300. DOI:10.1039/c9cc03750k
[12]
S. Lee, C. Chen, A.H. Flood, Nat. Chem. 5 (2013) 704-710. DOI:10.1038/nchem.1668
[13]
R. Cao, R.B. Rossdeutcher, Y. Zhong, et al., Nat. Chem. 15 (2023) 1559-1568. DOI:10.1038/s41557-023-01315-w
[14]
S. Niu, H. Xiao, X. Yang, et al., Chin. Chem. Lett. 34 (2023) 108042. DOI:10.1016/j.cclet.2022.108042
[15]
K. Choi, A.D. Hamilton, J. Am. Chem. Soc. 125 (2003) 10241-10249. DOI:10.1021/ja034563x
[16]
C.J. Pedersen, J. Am. Chem. Soc. 89 (1967) 7017-7036. DOI:10.1021/ja01002a035
[17]
R.M.I.P. Bruening, Chem. Rev. 91 (1991) 1721-2085. DOI:10.1021/cr00008a003
[18]
Y. Wu, C. Zhang, S. Fang, et al., Angew. Chem. Int. Ed. 61 (2022) e202209078. DOI:10.1002/anie.202209078
[19]
H. Sunohara, K. Koyamada, H. Takezawa, et al., Chem. Commun. 57 (2021) 9300-9302. DOI:10.1039/d1cc03620c
[20]
W. Lin, G. Zhang, X. Zhu, et al., J. Am. Chem. Soc. 145 (2023) 12609-12616. DOI:10.1021/jacs.3c01849
[21]
H. Wang, S. Fang, G. Wu, et al., J. Am. Chem. Soc. 142 (2020) 20182-20190. DOI:10.1021/jacs.0c10253
[22]
A.J. Plajer, E.G. Percástegui, M. Santella, et al., Angew. Chem. Int. Ed. 58 (2019) 4200-4204. DOI:10.1002/anie.201814149
[23]
Y. Chen, G. Wu, L. Chen, et al., Org. Lett. 22 (2020) 4878-4882. DOI:10.1021/acs.orglett.0c01722
[24]
W. Jiang, B. Huang, X. Zhao, et al., Chem 9 (2023) 2655-2668. DOI:10.1016/j.chempr.2023.06.020
[25]
W.Z.C.C. Yun Liu, Science 365 (2019) 159-161. DOI:10.1126/science.aaw5145
[26]
J. Wu, J.L. Greenfield, J. Am. Chem. Soc. 146 (2024) 20720-20727. DOI:10.1021/jacs.4c03817
[27]
S. Jiang, J.T.A. Jones, T. Hasell, et al., Nat. Commun. 2 (2011) 207. DOI:10.1038/ncomms1207
[28]
H. Li, H. Zhang, A.D. Lammer, et al., Nat. Chem. 7 (2015) 1003-1008. DOI:10.1038/nchem.2392
[29]
C. Ge, Z. Cao, T. Feng, et al., Angew. Chem. Int. Ed. 63 (2024) e202411401. DOI:10.1002/anie.202411401
[30]
T. Jiao, L. Chen, D. Yang, et al., Angew. Chem. Int. Ed. 56 (2017) 14545-14550. DOI:10.1002/anie.201708246
[31]
P. Jacques, V. Artero, J. Pecaut, et al., Proc. Natl. Acad. Sci. U. S. A. 106 (2009) 20627-20632. DOI:10.1073/pnas.0907775106
[32]
A. Dirksen, S. Dirksen, T.M. Hackeng, et al., J. Am. Chem. Soc. 128 (2006) 15602-15603. DOI:10.1021/ja067189k
[33]
S. Zhao, M.M. Abu-Omar, Macromolecules 51 (2018) 9816-9824. DOI:10.1021/acs.macromol.8b01976
[34]
Y. Lei, Q. Chen, P. Liu, et al., Angew. Chem. Int. Ed. 60 (2021) 4705-4711. DOI:10.1002/anie.202013045
[35]
T. Kawabata, Biophys. Physicobiol. 16 (2019) 391-406. DOI:10.2142/biophysico.16.0_391
[36]
A.M. Miguel Ponce-Vargas, Phys. Chem. Chem. Phys. 17 (2015) 18677-18683. DOI:10.1039/C5CP02737C
[37]
V.C.P.C. Camila Munoz Zuniga, G.F.C.A. Renato, L.T. Parreira, J. Phys. Chem. C 128 (2024) 14017-14024. DOI:10.1021/acs.jpcc.4c02692
[38]
K.D.T.B. Filip Ulatowski, J. Org. Chem. 81 (2016) 1746-1756. DOI:10.1021/acs.joc.5b02909