中国医科大学学报  2023, Vol. 52 Issue (9): 815-822

文章信息

黄谊强, 王子明, 罗杨, 罗水妹, 谢贤和, 张帆
HUANG Yiqiang, WANG Ziming, LUO Yang, LUO Shuimei, XIE Xianhe, ZHANG Fan
CDK5对胃癌PD-L1表达及生物学特性的影响
Effect of CDK5 on PD-L1 expression and biological characteristics of gastric cancer
中国医科大学学报, 2023, 52(9): 815-822
Journal of China Medical University, 2023, 52(9): 815-822

文章历史

收稿日期:2023-04-12
网络出版时间:2023-08-31 09:52:23
CDK5对胃癌PD-L1表达及生物学特性的影响
黄谊强1 , 王子明1 , 罗杨1 , 罗水妹1 , 谢贤和1,2,3 , 张帆1,2,3     
1. 福建医科大学附属第一医院肿瘤内科, 福建医科大学分子肿瘤研究所, 福州 350005;
2. 福建医科大学附属第一医院滨海院区国家区域医疗中心肿瘤内科, 福州 350212;
3. 福建省肿瘤精准诊疗重点实验室, 福州 350005
摘要目的 通过大数据挖掘与实验相结合,探讨CDK5对胃癌PD-L1表达及生物学特性的影响。方法 通过癌症基因组图谱(TCGA)数据库下载胃癌FPKM数据,通过R软件及其相关软件包依次进行CDK5与PD-L1表达及其相关性分析、CDK5高低表达分组的差异基因的基因本体(GO)和京都基因和基因组数据库(KEGG)通路富集分析,以及CDK5与免疫检查点、免疫细胞间相关性等生物信息学分析;通过CCK-8、Transwell、实时PCR、Western blotting、流式细胞术等检测CDK5抑制剂20-223对胃癌BGC-823细胞增殖、迁移、PD-L1表达、细胞周期及凋亡等的影响。结果 通过大数据发现CDK5在多种癌症中均高表达;CDK5与PD-L1在胃癌中高表达,且呈正相关。CDK5抑制剂抑制CDK5后,胃癌BGC-823细胞PD-L1蛋白的表达下降(P = 0.013 4),PD-L1 mRNA表达水平也下降(P = 0.000 4);过表达CDK5上调PD-L1 mRNA表达(P = 0.005 9)。CDK5抑制剂可显著抑制IFN-γ促进的PD-L1转录(P < 0.000 1)。抑制CDK5后,细胞周期阻滞于G2/M期;细胞凋亡增加,40 μmol/L组总凋亡细胞比例高于对照组(P = 0.037 7),80 μmol/L组总凋亡较40 μmol/L组进一步增加(P = 0.000 5);细胞迁移减少,Transwell实验结果显示,CDK5抑制剂组细胞穿过数量明显低于对照组(P = 0.002 5);划痕实验结果显示,CDK5抑制剂组迁移率明显低于对照组(4.39% vs 24.37%,P = 0.002 6)。CDK5抑制剂浓度0.04 μmol/L组细胞克隆形成能力明显低于对照组(克隆形成率32.60% vs 80.87%,P = 0.000 4)。结论 CDK5与PD-L1在胃癌中均高表达且呈正相关。CDK5通过IFN-γ通路促进胃癌BGC-823细胞PD-L1表达。CDK5抑制剂可促进胃癌细胞凋亡,抑制细胞周期、细胞迁移能力及克隆形成能力。
关键词胃癌    CDK5    PD-L1    
Effect of CDK5 on PD-L1 expression and biological characteristics of gastric cancer
1. Department of Oncology, Molecular Oncology Research Institute, The First Affiliated Hospital of Fujian Medical University, Fuzhou 350005, China;
2. Department of Oncology, National Regional Medical Center, Binhai Campus of The First Affiliated Hospital, Fujian Medical University, Fuzhou 350212, China;
3. Fujian Key Laboratory of Precision Medicine for Cancer, The First Affiliated Hospital of Fujian Medical University, Fuzhou 350005, China
Abstract: Objective To investigate the effect of cyclin-dependent kinase 5 (CDK5) on PD-L1 expression and biological characteristics of gastric cancer using big data mining combined with experiments. Methods The FPKM data of gastric cancer were obtained from the TCGA database, and the expression and correlation of CDK5 and PD-L1 were analyzed. Gene ontology and Kyoto Encyclopedia of Genes and Genomes pathway-enrichment analyses of the differentially expressed genes grouped by CDK5 expression levels were sequentially conducted using R and other related software. CDK5 and immune checkpoints, immune cell correlation, and other parameters were analyzed using bioinformatics. The effects of CDK5 inhibitor 20-223 on the cell proliferation and migration, cell cycle, apoptosis, and PD-L1 expression were analyzed in BGC-823 gastric cancer cells using various techniques, including CCK-8 and Transwell assays, real-time PCR, Western blotting, and flow cytometry. Results Big data mining revealed that CDK5 is highly expressed in various cancers, and both CDK5 and PD-L1 are highly expressed and positively correlated in gastric cancer. The mRNA level and protein expression of PD-L1 decreased after CDK5 inhibition in BGC-823 gastric cancer cells. Overexpressed CDK5 up-regulated PD-L1 mRNA (P = 0.005 9);however, CDK5 inhibition significantly rescued the transcription of PD-L1 promoted by IFN-γ (P < 0.000 1). Inhibition of CDK5 caused cell-cycle arrest in the G2/M phase and increased cell apoptosis than that in the control group. The proportion of total apoptotic cells increased in the 40 μmol/Lgroup (P = 0.037 7);further, the proportion in the 80 μmol/L group was higher than that in the 40 μmol/L group (P = 0.000 5). Moreover, cell migration was reduced. The Transwell assay detected that the number of migrating cells in the CDK5 inhibitor group, with 15.20 cells/field of view (20 times objective lens), was significantly lower than that in the control group, with 65.87 cells/field of view (P = 0.002 5). The scratch test revealed that the cell mobility after CDK5 inhibition (4.39%) was significantly lower than that of the control group (24.37%) without CDK5 inhibition (P = 0.002 6). The clonal formation rate reduced from 80.87% in the control cells to 32.60% in the cells exposed to 0.04 μmol/L of CDK5 inhibitor (P = 0.000 4). Conclusion CDK5 and PD-L1 are highly expressed and positively correlated in gastric cancer. CDK5 promotes the expression of PD-L1 through the IFN-γ pathway in BGC-823 cells. Moreover, in BGC-823 cells, the CDK5 inhibitor promotes cell apoptosis, whereas it inhibits cell cycle, cell migration, and colony formation.
Keywords: gastric cancer    cyclin-dependent kinase 5    PD-L1    

胃癌恶性度高,全球发病率和死亡率分别高居癌症的第5位和第4位[1]。近年来,PD-1/PD-L1抑制剂对恶性肿瘤(如恶性黑色素瘤、肺癌等)的治疗效果取得了里程碑式的进展[2],但在胃癌方面却仍未获得预期疗效[3]。因此,探讨调控胃癌PD-L1表达进而抑制其介导的免疫逃逸的新策略至关重要。CDK5既往被认为主要在神经系统中发挥作用,近年来发现CDK5参与肿瘤的免疫、凋亡、增殖、转移等[4-7],是肿瘤靶向治疗及免疫治疗的潜在靶点。研究[4, 8]表明,CDK5可调控PD-L1,在不同类型的肿瘤中机制也不尽相同,而其在胃癌中的调控作用尚未明确。本研究拟探讨CDK5对胃癌PD-L1表达及肿瘤增殖、迁移等特性的影响,以及抑制CDK5在胃癌免疫治疗及靶向治疗中的可行性。

1 材料与方法 1.1 数据来源

通过癌症基因组图谱(The Cancer Genome Atlas,TCGA)数据库(https://portal.gdc.cancer.gov/)下载375例胃癌样本和32例正常组织样本的转录组每千个碱基的转录每百万映射读取的片段数(fragments per kilobase of exon model per million mapped fragments,FPKM)数据及相应的临床病理和生存资料。

1.2 实验材料及方法

1.2.1 主要试剂和仪器

人胃癌细胞株BGC-823购自上海翼和应用生物技术有限公司;CDK5抑制剂20-223购自美国MedChemExpress公司;CDK5过表达质粒委托北京擎科生物公司合成;PD-L1抗体购自美国proteintech公司;β-actin抗体购自英国Abcam公司。凝胶成像仪(Biosciences AccuriC6型)购自美国Bio-Rad公司。

1.2.2 细胞培养

用含15%胎牛血清、1%双抗(青霉素1 000 U/mL、链霉素0.1 mg/mL)的DMEM培养基,于37 ℃、5%CO2恒温培养人胃癌BGC-823细胞。

1.2.3 CCK-8法

测定CDK5抑制剂20-223分别作用24、48、72、96 h对细胞活力的影响及其IC50

1.2.4 Western blotting

20 μmol/L CDK5抑制剂处理胃癌BGC-823细胞24 h,按常规方法提取细胞总蛋白。上样(每泳道20 μg)后,行聚丙烯酰胺凝胶电泳。转至0.45 μm PVDF膜,室温封闭1 h。4℃孵育一抗过夜,TBST洗膜,室温孵育二抗1 h,TBST洗脱,ECL化学发光显影。β-actin作为内参照。导出照片后用Adobe Photoshop软件读取各条带灰度值。

1.2.5 PD-L1表达检测

1/1 000DMSO及0、0.16、0.31、0.63、1.25、2.50、5.00、10.00、20.00、30.00、40.00 μmol/L CDK5抑制剂作用胃癌BGC-823细胞24 h,实时定量聚合酶链式反应(real-time fluorescence quantitative polymerase chain reaction,RT-qPCR)检测PD-L1表达;10 ng/mL干扰素-γ(inteferon-γ,IFN-γ)5 μmol/L CDK5抑制剂、10 ng/mL IFN-γ+5 μmol/L CDK5抑制剂分别作用于胃癌BGC-823细胞24 h,qPCR检测PD-L1表达;用CDK5过表达质粒、psPAX2质粒及VSVG质粒构建CDK5过表达稳转株,qPCR检测PD-L1表达。

1.2.6 细胞周期检测

20 μmol/L CDK5抑制剂分别抑制胃癌BGC-823细胞24、48、72、96 h,碘化丙啶染色,流式细胞术检测细胞周期。

1.2.7 细胞凋亡检测

80、40 μmol/L CDK5抑制剂抑制胃癌BGC-823细胞CDK5,Annexin V-FITC/碘化丙啶染色,流式细胞术检测细胞凋亡。

1.2.8 细胞迁移趋化能力检测

2 μmol/L CDK5抑制剂作用胃癌BGC-823细胞24 h,Transwell测定细胞迁移趋化能力;1 μmol/L CDK5抑制剂作用胃癌BGC-823细胞48 h,划痕实验测定细胞迁移能力。

1.2.9 细胞增殖检测

0.02、0.04 μmol/L CDK5抑制剂作用胃癌BGC-823细胞2周,克隆形成实验检测细胞增殖能力。

1.3 统计学分析

采用GraphPad Prism 8进行统计分析,计量资料2组间比较采用t检验,2组以上样本数据采用单因素方差分析及两两比较。P < 0.05为差异有统计学意义。

2 结果 2.1 CDK5及PD-L1的表达

对TCGA数据库的中CDK5表达量进行泛癌分析,结果显示,CDK5在多种癌症中均呈高表达,见图1A。对胃癌CDK5及PD-L1表达量进行分析,发现配对样本及非配对样本CDK5及PD-L1表达量均显著高于正常样本,见图1B~1E

A, the pan-cancer analysis of CDK5 expression in the TCGA database shows that CDK5 is highly expressed in a variety of cancers; B, differential expression analysis of CDK5 in unpaired samples of 375 gastric cancer samples and 32 normal tissue samples; C, differential expression analysis of CDK5 in 32 paired samples; D, analysis of differential expression of PD-L1;E, analysis of differential expression of PD-L1 in paired samples. ** P < 0.01;*** P < 0.001. 图 1 CDK5与PD-L1差异表达分析 Fig.1 Differential expression analysis of CDK5 and PD-L1

2.2 CDK5与胃癌分期、免疫检查点、免疫细胞相关

构建CDK5高、低表达组差异基因热图及临床特征热图,对CDK5与免疫检查点(包括PD-L1)、免疫细胞浸润进行相关性分析,结果显示,CDK5与胃癌免疫检查点、免疫细胞浸润和N分期相关。

2.3 CDK5高、低表达组的基因本体(gene ontology,GO)功能分析和京都基因和基因组数据库(Kyoto Encyclopedia of Genes and Genomes,KEGG)通路富集分析

GO分析表明,CDK5显著富集的生物过程包括肌肉收缩、肌肉细胞分化等。显著富集的细胞成分包括神经元胞体、突触前结节肌节、肌肉纤维等。显著富集的分子功能包括离子通道活性、被动膜转运体活性肌肉结构成分等。

KEGG通路富集分析发现,差异基因富集通路有钙离子信号转导通路、cAMP信号转导通路、cGMP-PKG信号转导通路、胃酸分泌通路等。

2.4 CDK5抑制剂对胃癌BGC-823细胞活力的影响

检测不同浓度CDK5抑制剂20-223对BGC-823细胞活力的影响,结果显示,24、48、72、96 h的IC50分别为131.70、40.72、1.33、0.90 μmol/L,见图2

A, 24 h dose-response curve, IC50 is 131.70 μmol/L; B, 48 h dose-response curve, IC50 is 40.72 μmol/L; C, 72 h dose-response curve, IC50 is 1.33 μmol/L; D, 96 h dose-response curve, IC50 is 0.90 μmol/L. 图 2 CDK5抑制剂20-223对胃癌BGC-823细胞的剂量-反应曲线 Fig.2 Dose-response curve of CDK5 inhibitor 20-223 on gastric cancer BGC-823 cells

2.5 抑制及过表达CDK5对PD-L1表达的影响

应用CDK5抑制剂对胃癌BGC-823细胞干预24 h,Western blotting及qPCR检测显示,PD-L1蛋白及mRNA表达显著下调(P = 0.013 4,P = 0.000 4)。应用不同浓度CDK5抑制剂20-223对胃癌BGC-823细胞干预24 h,发现2.5 μmol/L抑制剂可最大程度抑制PD-L1转录。见图3A~3C

A, Western blotting detection showed that compared with the control group, the expression of PD-L1 protein in the CDK5 inhibitor group was down-regulated (*P = 0.013 4);B, qPCR detection showed that the PD-L1 mRNA in the CDK5 inhibitor group was significantly higher than that in the control group (***P = 0.000 4);gradient concentration of CDK5 inhibitor gastric cancer BGC-823 cells; C, gradient concentration of lFN-γ up-regulates PD-L1 in gastric cancer BGC-823 cells, lFN-γ reaches 1.25 ng/mL to maximize the expression of PD-L1 mRNA, IFN-γ up-regulates PD-L1 mRNA to 14.96 times (P < 0.000 1);D, the degree of PD-L1 down-regulation increased with the increase of the concentration of CDK5 inhibitors; E, PD-L1 mRNA in the IFN-γ+CDK5 inhibitor group was significantly restored compared with the lFN-γ group (****P < 0.000 1), it was restored to the basal expression level (there was no significant difference between the lFN-γ+CDK5 inhibitor group and the control group, P = 0.998 3);F, CDK5 was overexpressed 10.80 times (****P < 0.000 1), PD-L1 was up-regulated by 1.85 times (**P = 0.005 9). 图 3 CDK5调控PD-L1表达及其机制 Fig.3 CDK5 regulates PD-L1 expression and its mechanism

2.6 CDK5抑制剂挽救IFN-γ促进的PD-L1转录

IFN-γ可显著促进PD-L1转录,1.25 ng/mL IFN-γ可最大程度促进PD-L1转录,而CDK5抑制剂可极大程度挽救IFN-γ促进的PD-L1转录,提示CDK5通过IFN-γ激活的通路下调PD-L1表达。见图3D

2.7 过表达CDK5促进PD-L1转录

CDK5过表达效率达10.80倍;PD-L1相对表达值升高1.85倍。见图3F

2.8 CDK5抑制剂对胃癌BGC-823细胞周期的阻滞作用

应用20 μmol/L CDK5抑制剂干预胃癌BGC-823细胞,流式细胞术周期检测结果显示,与对照组相比,CDK5抑制剂组细胞周期被抑制在G2/M期,干预12 h、24 h、48 h时,G2/M期细胞比例呈递增趋势,见图4

A, flow cytometry cell cycle detection shows the cycle distribution of the control group, CDK5 inhibitor 12 h group, CDK5 inhibitor 24 h group, CDK5 inhibitor 48 h group; B, C, CDK5 inhibitor acts on BGC-823 cells, the cell cycle is inhibited, inhibition occurs in the G2/M phase, most obviously at 24 h, and the decrease in the proportion of cells in the G2/M phase at 48 h compared to 24 h may be due to the increase in cell death at 48 h. 图 4 抑制CDK5致胃癌BGC-823细胞周期抑制于G2/M期 Fig.4 Inhibition of CDK5 in gastric cancer BGC-823 cell cycle arrest in G2/M phase

2.9 抑制CDK5促进胃癌BGC-823细胞凋亡

应用80、40 μmo/L CDK5抑制剂干预胃癌BGC-823细胞48 h,流式细胞术周期检测结果显示,与对照组相比,40 μmol/L组早期凋亡及晚期凋亡均无明显差异,但总凋亡细胞比例增加(P = 0.037 7),80 μmol/L组较40 μmol/L组进一步增加(P = 0.000 5);80 μmol/L组早期及晚期凋亡细胞比例均增加(P = 0.000 2,P = 0.003 9)。以上均提示抑制CDK5可促进细胞凋亡。见图5

A, representative scatter plots of PI (y-axis) vs. annexin V (x-axis); B, compared with the control group, there was no significant difference in early apoptosis and late apoptosis in the 40 μmol/L group, but the proportion of total apoptotic cells increased (P = 0.037 7), and the total apoptosis in the 80 μmol/L group was further increased compared with the 40 μmol/L group (P = 0.000 5); 80 μmol/L The proportion of early apoptotic cells (P = 0.000 2) and the proportion of late apoptotic cells (P = 0.003 9) in the group both increased. 图 5 抑制CDK5对胃癌BGC-823细胞凋亡的影响 Fig.5 Effects of inhibiting CDK5 on the apoptosis of gastric cancer BGC-823 cells

2.10 抑制CDK5减弱胃癌BGC-823细胞迁移能力

划痕实验结果显示,CDK5抑制剂组迁移率明显低于对照组(4.39% vs 24.37%,P = 0.002 6),表明抑制CDK5使胃癌BGC-823细胞迁移趋化能力明显减弱。见图6A6B

A, B, after 48 h of CDK5 inhibitor treatment, the migration rate of 1 μmol/L CDK5 inhibitor group was significantly lower than that of the control group (**P = 0.002 6), indicating that inhibiting CDK5 weakened the migration and chemotactic ability of gastric cancer BGC-823 cells (×40);C, D, after 24 h, the number of cells passing through the chamber in the 2 μmol/L CDK5 inhibitor group was significantly lower than that of the control group (**P = 0.002 5)(×100). 图 6 抑制CDK5对胃癌BGC-823细胞迁移能力的影响 Fig.6 Effects of inhibiting CDK5 on the migration ability of gastric cancer BGC-823 cells

2.11 抑制CDK5降低胃癌BGC-823细胞迁移趋化能力

Transwell实验结果显示,CDK5抑制剂组细胞穿过数量明显低于对照组(20倍物镜下15.20个/视野vs 65.87个/视野,P = 0.002 5),表明抑制CDK5可使胃癌BGC-823细胞迁移趋化能力明显减弱。见图6C6D

2.12 抑制CDK5降低胃癌BGC-823细胞增殖能力

与对照组(克隆形成率80.87%)相比,CDK5抑制剂0.02 μmol/L组克隆形成能力(80.13%)无明显改变(P = 0.996 1),0.04 μmol/L组克隆形成能力(32.60%)则明显降低(P = 0.000 4)。见图7

***P = 0.000 4. 图 7 抑制CDK5对胃癌BGC-823细胞克隆形成能力的影响 Fig.7 Effects of inhibiting CDK5 on the colony formation ability of gastric cancer BGC-823 cells

3 讨论

肿瘤主要表现为肿瘤细胞增殖增加,侵袭增强,凋亡减少,代谢特征和免疫微环境改变,血管结构异常,以及免疫逃逸等[9]。对应这些肿瘤特性,本研究探索了CDK5对胃癌BGC-823细胞免疫检查点PD-L1及细胞周期、凋亡、迁移的影响。

本研究结果显示,抑制胃癌BGC-823细胞CDK5表达可致PD-L1 mRNA和蛋白表达均下调,过表达CDK5则可促进PD-L1 mRNA表达,与本研究中生物信息学预测提示的“CDK5及PD-L1在胃癌中均高表达,且二者呈正相关”一致,符合转录调控或转录后调控的特点。

胃癌中,PD-L1表达主要受IFN-γ/JAK/STAT1/IRF1通路转录调控[10]。IRF1主要由磷酸化STAT1转录促进调控,而JAK、STAT的活性都通过磷酸化调节,是CDK5作用的潜在位点。本研究发现,抑制胃癌BGC-823细胞CDK5可挽救IFN-γ刺激的PD-L1 mRNA表达,提示CDK5在胃癌BGC-823细胞中通过IFN-γ通路转录促进PD-L1表达。在髓母细胞瘤中,CDK5也通过IFN-γ通路调控PD-L1,CDK5并非直接作用于此通路引起JAK、STAT1磷酸化水平及IRF1表达水平改变,而是通过IRF2BP2/IRF2/IRF1途径转录促进PD-L1表达,但CDK5直接作用的位点尚未明确[4]。PTPN2、SOCs、PTP1B、PIAS等多种分子均可作用于JAK/STAT通路,调控IFN-γ诱导的基因(如PD-L1)表达,可能是胃癌CDK5间接作用于IFN-γ/JAK/STAT通路促进PD-L1表达的潜在旁路[11-14]

在肺腺癌中,敲低CDK5可下调PD-L1表达,但PD-L1 mRNA水平却没有改变,表明CDK5不是在转录水平调控PD-L1,而是通过抑制TRIM21泛素化活性,抑制PD-L1泛素化降解,最终导致PD-L1上调[8]。故胃癌BGC-823细胞中CDK5调控PD-L1机制与肺腺癌中不同。表明不同癌症中CDK5调控PD-L1的方式不尽相同。

转录因子是转录调控的关键,PD-L1启动子报告基因可检测转录水平的改变,CDK5的直接作用分子及其磷酸化位点则需要蛋白质谱磷酸化作用分析、蛋白质谱相互作用分析并结合测序通路分析进一步探索,并最终进行体外验证。

综上所述,本研究结果显示,CDK5与PD-L1在胃癌中均高表达且呈正相关,在胃癌BGC-823细胞中,CDK5通过IFN-γ通路促进PD-L1表达,CDK5抑制剂在下调PD-L1的同时,促进细胞凋亡、阻滞细胞周期、降低细胞迁移能力及克隆形成能力。

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